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Efficient brain lesion segmentation using multi-modality tissue-based feature selection and support vector machines

Fiot, Jean-Baptiste; Cohen, Laurent D.; Raniga, Parnesh; Fripp, Jürgen (2013), Efficient brain lesion segmentation using multi-modality tissue-based feature selection and support vector machines, International Journal for Numerical Methods in Biomedical Engineering, 29, 9, p. 905-915. http://dx.doi.org/10.1002/cnm.2537

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_FIOT_IJNM2013_Efficicient_brain_lesion_segmentation_using_multi-modality_tissue-based_feature_selection_and_SVM.pdf (570.0Kb)
Type
Article accepté pour publication ou publié
Date
2013
Journal name
International Journal for Numerical Methods in Biomedical Engineering
Volume
29
Number
9
Publisher
Wiley
Pages
905-915
Publication identifier
http://dx.doi.org/10.1002/cnm.2537
Metadata
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Author(s)
Fiot, Jean-Baptiste

Cohen, Laurent D.
CEntre de REcherches en MAthématiques de la DEcision [CEREMADE]
Raniga, Parnesh

Fripp, Jürgen
Abstract (EN)
Support vector machines (SVM) are machine learning techniques that have been used for segmentation and classification of medical images, including segmentation of white matter hyper-intensities (WMH). Current approaches using SVM for WMH segmentation extract features from the brain and classify these followed by complex post-processing steps to remove false positives. The method presented in this paper combines advanced pre-processing, tissue-based feature selection and SVM classification to obtain efficient and accurate WMH segmentation. Features from 125 patients, generated from up to four MR modalities [T1-w, T2-w, proton-density and fluid attenuated inversion recovery(FLAIR)], differing neighbourhood sizes and the use of multi-scale features were compared. We found that although using all four modalities gave the best overall classification (average Dice scores of 0.54  ±  0.12, 0.72  ±  0.06 and 0.82  ±  0.06 respectively for small, moderate and severe lesion loads); this was not significantly different (p = 0.50) from using just T1-w and FLAIR sequences (Dice scores of 0.52  ±  0.13, 0.71  ±  0.08 and 0.81  ±  0.07). Furthermore, there was a negligible difference between using 5 × 5 × 5 and 3 × 3 × 3 features (p = 0.93). Finally, we show that careful consideration of features and pre-processing techniques not only saves storage space and computation time but also leads to more efficient classification, which outperforms the one based on all features with post-processing.
Subjects / Keywords
image processing; brain lesion; segmentation; classification; support vector machines

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