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The Graph Motif Problem Parameterized by the Structure of the Input Graph

Bonnet, Édouard; Sikora, Florian (2015), The Graph Motif Problem Parameterized by the Structure of the Input Graph, in Husfeldt, Thore; Kanj, Iyad, 10th International Symposium on Parameterized and Exact Computation (IPEC 2015). Proceedings, Schloss Dagstuhl--Leibniz-Zentrum für Informatik : Wadern, p. 319--330. 10.4230/LIPIcs.IPEC.2015.319

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Type
Communication / Conférence
Date
2015
Conference title
10th International Symposium on Parameterized and Exact Computation (IPEC 2015)
Conference date
2015-09
Conference city
Patras
Conference country
Greece
Book title
10th International Symposium on Parameterized and Exact Computation (IPEC 2015). Proceedings
Book author
Husfeldt, Thore; Kanj, Iyad
Publisher
Schloss Dagstuhl--Leibniz-Zentrum für Informatik
Published in
Wadern
ISBN
978-3-939897-92-7
Pages
319--330
Publication identifier
10.4230/LIPIcs.IPEC.2015.319
Metadata
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Author(s)
Bonnet, Édouard cc
Laboratoire d'analyse et modélisation de systèmes pour l'aide à la décision [LAMSADE]
Sikora, Florian cc
Laboratoire d'analyse et modélisation de systèmes pour l'aide à la décision [LAMSADE]
Abstract (EN)
The Graph Motif problem was introduced in 2006 in the context of biological networks. It consists of deciding whether or not a multiset of colors occurs in a connected subgraph of a vertex-colored graph. Graph Motif has been analyzed from the standpoint of parameterized complexity. The main parameters which came into consideration were the size of the multiset and the number of colors. Though, in the many applications of Graph Motif, the input graph originates from real-life and has structure. Motivated by this prosaic observation, we systematically study its complexity relatively to graph structural parameters. For a wide range of parameters, we give new or improved FPT algorithms, or show that the problem remains intractable. Interestingly, we establish that Graph Motif is W[1]-hard (while in W[P]) for parameter max leaf number, which is, to the best of our knowledge, the first problem to behave this way.
Subjects / Keywords
Graph Motif; FPT; Parameterized Complexity; Structural Parameters; Computational Biology

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