• xmlui.mirage2.page-structure.header.title
    • français
    • English
  • Help
  • Login
  • Language 
    • Français
    • English
View Item 
  •   BIRD Home
  • LAMSADE (UMR CNRS 7243)
  • LAMSADE : Publications
  • View Item
  •   BIRD Home
  • LAMSADE (UMR CNRS 7243)
  • LAMSADE : Publications
  • View Item
JavaScript is disabled for your browser. Some features of this site may not work without it.

Browse

BIRDResearch centres & CollectionsBy Issue DateAuthorsTitlesTypeThis CollectionBy Issue DateAuthorsTitlesType

My Account

LoginRegister

Statistics

Most Popular ItemsStatistics by CountryMost Popular Authors
Thumbnail - Request a copy

Findable and reusable workflow data products: A genomic workflow case study

Gaignard, Alban; Skaf-Molli, Hala; Belhajjame, Khalid (2020), Findable and reusable workflow data products: A genomic workflow case study, Semantic Web Journal, 11, 5, p. 751-763. 10.3233/SW-200374

Type
Article accepté pour publication ou publié
Date
2020
Journal name
Semantic Web Journal
Volume
11
Number
5
Pages
751-763
Publication identifier
10.3233/SW-200374
Metadata
Show full item record
Author(s)
Gaignard, Alban cc
Skaf-Molli, Hala cc
Belhajjame, Khalid
Abstract (EN)
While workflow systems have improved the repeatability of scientific experiments, the value of the processed (intermediate) data have been overlooked so far. In this paper, we argue that the intermediate data products of workflow executions should be seen as first-class objects that need to be curated and published. Not only will this be exploited to save time and resources needed when re-executing workflows, but more importantly, it will improve the reuse of data products by the same or peer scientists in the context of new hypotheses and experiments. To assist curator in annotating (intermediate) workflow data, we exploit in this work multiple sources of information, namely: (i) the provenance information captured by the workflow system, and (ii) domain annotations that are provided by tools registries, such as Bio.Tools. Furthermore, we show, on a concrete bioinformatics scenario, how summarising techniques can be used to reduce the machine-generated provenance information of such data products into concise human- and machine-readable annotations.
Subjects / Keywords
FAIR; Linked Data; scientific workflows; provenance; bioinformatics; data summaries

Related items

Showing items related by title and author.

  • Thumbnail
    Découvrabilité et réutilisation de données produites par des workflows : un cas d’usage en génomique 
    Gaignard, Alban; Skaf-Molli, Hala; Belhajjame, Khalid Communication / Conférence
  • Thumbnail
    Découvrabilité et réutilisation de données produites par des workflows : un cas d’usage en génomique 
    Gaignard, Alban; Skaf-Molli, Hala; Belhajjame, Khalid (2021) Communication / Conférence
  • Thumbnail
    SHARP: Harmonizing and Bridging Cross-Workflow Provenance 
    Gaignard, Alban; Belhajjame, Khalid; Skaf-Molli, Hala (2017) Communication / Conférence
  • Thumbnail
    Scientific workflows for computational reproducibility in the life sciences: Status, challenges and opportunities 
    Cohen-Boulakia, Sarah; Belhajjame, Khalid; Collin, Olivier; Chopard, Jérôme; Froidevaux, Christine; Gaignard, Alban (2017) Article accepté pour publication ou publié
  • Thumbnail
    LabelFlow: Exploiting Workflow Provenance to Surface Scientific Data Provenance 
    Alper, Pinar; Belhajjame, Khalid; Goble, Carole; Karagoz, pinar (2015) Communication / Conférence
Dauphine PSL Bibliothèque logo
Place du Maréchal de Lattre de Tassigny 75775 Paris Cedex 16
Phone: 01 44 05 40 94
Contact
Dauphine PSL logoEQUIS logoCreative Commons logo