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A Preliminary Comparison of P-Tool Consistency

Murillo, Javier; Spetale, Flavio; Tapia, Elizabeth; Krsticevic, Flavia; Cailloux, Olivier; Guillaume, Serge; Vazquez, Gustavo; Fernandez, Tamara; Destercke, S.; Ponce, Sergio; Bulacio, P. (2020), A Preliminary Comparison of P-Tool Consistency, in González Díaz, César A.; Chapa González, Christian; Laciar Leber, Eric, VIII Latin American Conference on Biomedical Engineering and XLII National Conference on Biomedical Engineering, Springer, p. 731-735. 10.1007/978-3-030-30648-9_97

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Murillo2020.pdf (252.3Kb)
Type
Communication / Conférence
Date
2020
Conference title
Proceedings of CLAIB-CNIB 2019
Conference date
2019-10
Conference city
Cancún
Conference country
Mexico
Book title
VIII Latin American Conference on Biomedical Engineering and XLII National Conference on Biomedical Engineering
Book author
González Díaz, César A.; Chapa González, Christian; Laciar Leber, Eric
Publisher
Springer
ISBN
978-3-030-30648-9
Number of pages
1518
Pages
731-735
Publication identifier
10.1007/978-3-030-30648-9_97
Metadata
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Author(s)
Murillo, Javier
Spetale, Flavio
Tapia, Elizabeth
Krsticevic, Flavia
Cailloux, Olivier
Laboratoire d'analyse et modélisation de systèmes pour l'aide à la décision [LAMSADE]
Guillaume, Serge
Vazquez, Gustavo
Fernandez, Tamara
Destercke, S.
Ponce, Sergio
Bulacio, P.
Abstract (EN)
Many Bioinformatics tools, known as p-tools, have been developed to predict the effect of single nucleotide polymorphisms (SNPs) on gene functionality, in an effort to reduce the need for in-vivo assays. However, the large number of p-tools available and the heterogeneity of their output make their selection and comparison difficult. To study the consistency of predictions across p-tools, here we present two indices and test them on five p-tools whose predictions are based on different types of background information. For this test, SNPs from well-known organism Drosophila melanogaster are considered.
Subjects / Keywords
SNP; Gene functionality; Missense nonsense mutation

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